1Department of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
2Department of Pathology, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul, Korea
3Department of Oncology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Korea
4AI Recommendation, T3K, SK Telecom, Seoul, Korea
Copyright © 2023 by the Korean Cancer Association
This is an Open-Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Ethical Statement
This retrospective study was approved by the Asan Medical Centre Institutional Review Board (2012-0788). The patient consent was waived due to retrospective nature of the study.
Author Contributions
Conceived and designed the analysis: Jeong SU, Lee JL, Cho YM.
Collected the data: Jeong SU, Shin SJ.
Contributed data or analysis tools: Jeong SU, Park JM, Yoon SY, Cho YM.
Performed the analysis: Jeong SU, Hwang HS, Go H, Jeong G.
Wrote the paper: Jeong SU, Cho YM.
Conflicts of Interest
Conflict of interest relevant to this article was not reported.
Variable | Patient No. | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | |
Age (yr) | 56 | 54 | 42 | 53 | 54 | 66 | 40 | 53 | 45 | 55 |
Sex | Male | Male | Male | Female | Male | Female | Male | Male | Male | Male |
Pre-TKI treatment (regimen) | None | Interferon | None | None | None | None | None | Radiation | Interferon | IL-2 |
TKI treatment | ||||||||||
From initial diagnosis to TKI initiation (mo) | 1 | 61 | 71 | 2 | 4 | 1 | 194 | 3 | 2 | 132 |
Regimen | Sunitinib | Sunitinib | Sunitinib | Sunitinib | Pazopanib | Sunitinib | Pazopanib | Sunitinib | Pazopanib | Sunitinib |
Pre-TKI biopsy | ||||||||||
Organ | Kidney | Brain | Lung | Kidney | Kidney | Kidney | Cheek | Kidney | Kidney | Leg |
Procedures | RN | M | M | RN | RN | NB | NB | PN | RN | NB |
WHO/ISUP grade | 3 | 1 | 3 | 4 | 4 | 2 | 2 | 4 | 4 | 2 |
Sarcomatoid area (%) | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 50 | 80 | 0 |
Necrosis (%) | 0 | 0 | 0 | 30 | 15 | 0 | 0 | 5 | 30 | 0 |
Post-TKI biopsy | ||||||||||
Organ | Ileum | Scalp | Lung | Retroperitoneum | Brain | Stomach | Thigh | Abdominal wall | Ileum | Lung |
Procedures | Resection | Resection | Resection | Resection | Resection | Resection | Resection | NB | Resection | NB |
WHO/ISUP grade | 4 | 1 | 3 | 4 | 4 | 4 | 3 | 4 | 4 | 4 |
Sarcomatoid area (%) | 5 | 0 | 0 | 40 | 60 | 60 | 0 | 80 | 95 | 0 |
Necrosis (%) | 0 | 0 | 0 | 80 | 0 | 0 | 5 | 0 | 5 | 0 |
Follow-up | ||||||||||
Progression-free survival (mo) | 9 | 70 | 46 | 4 | 12 | 46 | 15 | 20 | 1 | 6 |
Time to death from TKI initiation (mo) | 12 | 89 | 96 | 8 | 39 | 55 | 26 | 23 | 5 | 10 |
IL-2, interleukin-2; M, metastatectomy; NB, needle biopsy; PN, partial nephrectomy, RN, radical nephrectomy; TKI, tyrosine kinase inhibitor; WHO/ISUP, World Health Organization/International Society of Urological Pathology.
Pathway name | Length | Overlap | p-value | FDR |
---|---|---|---|---|
Glycolysis | 200 | 8 | 0.000092 | 0.016 |
Hypoxia | 200 | 9 | 0.000013 | 0.006 |
mTORC1 signaling | 200 | 10 | 0.000001 | 0.001 |
Starch and sucrose metabolism | 52 | 5 | 0.000032 | 0.010 |
Integrin 3 pathway | 43 | 4 | 0.000238 | 0.027 |
UPA Upar pathway | 42 | 4 | 0.000217 | 0.027 |
Calnexin calreticulin cycle | 11 | 3 | 0.000054 | 0.012 |
Glucuronidation | 18 | 3 | 0.000260 | 0.027 |
Integrin alpha IIb/beta 3 signaling | 27 | 4 | 0.000037 | 0.010 |
Integrin cell surface interactions | 79 | 7 | 0.000001 | 0.001 |
N glycan trimming in the ER and calnexin caleticulun cycle | 13 | 3 | 0.000093 | 0.016 |
Platelet aggregation plug formation | 36 | 4 | 0.000118 | 0.016 |
Insulin receptor pathway in cardiac myocytes | 51 | 4 | 0.000462 | 0.045 |
PIP3 signalling in cardiac myocytes | 67 | 5 | 0.000112 | 0.016 |
ER, endoplasmic reticulum; FDR, false discovery rate; mTORC1, phospho-mammalian target of rapamycin complex 1; PD-L1, programmed death-ligand 1; PIP3, phosphatidylinositol (3,4,5)-trisphosphate; UPA, urokinase-type plasminogen activator; Upar, urokinase plasminogen activator receptor.
IL-2, interleukin-2; M, metastatectomy; NB, needle biopsy; PN, partial nephrectomy, RN, radical nephrectomy; TKI, tyrosine kinase inhibitor; WHO/ISUP, World Health Organization/International Society of Urological Pathology.
ER, endoplasmic reticulum; FDR, false discovery rate; mTORC1, phospho-mammalian target of rapamycin complex 1; PD-L1, programmed death-ligand 1; PIP3, phosphatidylinositol (3,4,5)-trisphosphate; UPA, urokinase-type plasminogen activator; Upar, urokinase plasminogen activator receptor.