, Minwoo Kim1, Gi-Sue Kang1, Sung-Joon Ye2, Changhoon Choi3, Won Park3, Michael Hay4, Hiroshi Hirata5
, G-One Ahn1,6
1College of Veterinary Medicine, Seoul National University, Seoul, Korea
2Graduate School of Convergence Science and Technology, Seoul National University, Suwon, Korea
3Department of Radiation Oncology, Samsung Medical Center, Seoul, Korea
4Auckland Cancer Society Research Centre, University of Auckland, Auckland, New Zealand
5Division of Bioengineering and Bioinformatics, Faculty of Information Science and Technology, Hokkaido University, Sapporo, Japan
6Cancer Research Institute, College of Medicine, Seoul National University, Seoul, Korea
Copyright © 2026 by the Korean Cancer Association
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
Author Contributions
Conceived and designed the analysis: Ahn GO, Hirata H, Hay M, Park W, Choi C, Ye SJ.
Collected the data: Ahn GO, Hirata H, Hay M, Oh T, Kim M, Kang GS.
Contributed data or analysis tools: Ahn GO, Hay M, Hirata H, Oh T, Kim M.
Performed the analysis: Ahn GO, Hirata H, Hay M, Oh T, Kim M.
Wrote the paper: Ahn GO, Hirata H, Oh T.
Conflicts of Interest
Conflict of interest relevant to this article was not reported.
Funding
This study was supported by the Research Grant from Seoul National University (Multidisciplinary Research Grant, no. 550-20230098 to G.O.A.), grants from the Ministry of Science and ICT (Information and Communications Technology), Korea (grant no. RS-2024-00391742 and 2023-00218623, and 2025-02316610 to G.O. Ahn), the Ministry of Education, Korea (Brain Korea 21 Four, Future Veterinary Medicine Leading Education and Research Center), Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University, and the Japan Society for the Promotion of Science (JSPS) KAKENHI, Japan (grant no. JP21K18165 and JP22H00200 to H.H.).
| Cancer type | Database | Method(s) to analyze the relationship between hypoxia and immune cells | Hypoxia-relevant gene | Result | Reference |
|---|---|---|---|---|---|
| Osteosarcoma | Transcriptional expression data: TARGET, GEO | CIBERSORT, Immune cell abundance identifier (ImmuCellAI), ESTIMATE, LASSO regression | MAFF, COL5A2, FAM162A, SQOR, UQCRB, SFXN4, PFKFB2, COX6A2 | Patients with high risk scores (high hypoxic gene expression) exhibited poor prognosis, ‘cold’ tumor phenotype, predicted to have poor responses to immunotherapy | [73] |
| Transcriptome data: GTEx | |||||
| Hypoxia-related genes: Molecular Signatures Database (MSigDB) | |||||
| Breast cancer | RNA-seq: TCGA, the University of California Santa Cruz Xena | ImmuCellAI, ESTIMATE, Immunophenoscore (IPS), TIDE algorithm | DARS2, ESRP1, SLC2A1, TH, MAFF | Higher risk group with poor outcomes had lower stromal and immune score with increased M2 & M0 macrophages, resting NK cells, regulatory T cells, monocytes and neutrophils. Prognosis analysis towards anti–PD-L1 therapy did not meet the statistical differences between low and high risk score patient groups | [74] |
| Microarray dataset: GEO | |||||
| Immunotherapeutic cohorts: IMvigor210 cohort (advanced urothelial cancer with atezolizumab intervention) & GEO | |||||
| Hypoxia-related genes: MSigDB | |||||
| Gastric cancer | Single-cell RNA-seq: GEO database (10 normal tissue, 26 gastric cancer samples) | CIBERSORT, ESTIMATE, LASSO regression, TIDE | POSTN, BMP4, MXRA5, LBH | Higher hypoxia score patients had fewer antitumor immune cells (e.g., activated NK cells and CD8+ T cells) while cancer-promoting immune cells (e.g., resting NK cells and M2 macrophages) were increased. Patients with high hypoxia score had a poor prognosis to immunotherapy and lower TMB | [75] |
| Bulk RNA-seq: TCGA (32 normal tissues, 375 gastric cancer tissues) | |||||
| Pancreatic ductal adenocarcinoma | RNA-seq: TCGA | LASSO regression, XGBoost, Random Forest, TIDE | PKP2, SLC2A1, LDHA, PlGA, PLOD1, PTGS2, GCK, POMT1, TIMM50, FUT8, ENO1, PDK1, CHEK2, MPC1, HSPA5, PLAC8, KDM3A, P4HA1, PPlA, NUP98, ALDH1B1, 6TC1, SLC25A4, TIMMDC1, CENPA, NSUN2, SLC25A42, TIPARP, ERRFI1, PNPT1, AK4 | Patients with high-risk scores had more severe immunosuppressive environment (e.g., M0 macrophages and dendritic cells) and poor prognosis to immunotherapy | [72] |
| Transcriptome data: GTEx | |||||
| Clear cell renal carcinoma | RNA-seq: TCGA-KIRC sample | LASSO regression, t-SNE, ImmuCellAI | PLAUR, UCN, SPABPC1L, LC16A12, NFE2L3, KCNAB1 | High hypoxia and low immune status are associated with poor overall survival. A prognostic model based on six hypoxia–immune-related genes was constructed and validated, showing good predictive performance | [76] |
| Lung adenocarcinoma | RNA-seq: TCGA-LUAD sample | LASSO regression | HK1, SLC2A1, STC1, XPNPEP1, PDK3, PFKL | Hypoxia-related genes that their expression influenced immune cell infiltration can serve as poor prognostic markers and potential targets for immunotherapy in LUAD | [77] |
| Microarray: GEO (GSE72094) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Head and neck squamous cell carcinoma (HNSCC) | RNA-seq: TCGA-HNSCC sample | LASSO regression, CIBERSORT, ESTIMATE, TIDE, Xcell | SRPX, PGK1, STG1, HS3ST1, CDKN1B, HK1 | The group with high expression of hypoxia-related genes showed lower immune cell infiltration and poor prognosis. This prognostic model also has potential for predicting responses to immune checkpoint inhibitor therapy | [78] |
| Microarray: GEO (GSE65858, GSE41613, GSE85446) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Cervical cancer | RNA-seq: TCGA-CESC sample | Cox regression, LASSO regression, ESTIMATE, CIBERSORT, MCPcounter | EFNA1, IER3, ISG20, KLF7, LDHC, P4HA2, PGM1, RBPJ, STC1 | Hypoxia-related genes are associated with increased immunosuppressive cells and decreased antitumor immune cells in tumor. ccHPS model might give us insights into antitumor immunotherapy and further improve the strategies for treating cervical cancer | [79] |
| Microarray: GEO (GSE44001) | |||||
| Gene annotation: GENCODE (human) | |||||
| Chemotherapeutic sensitivity for tumor samples: genomics of drug sensitivity in cancer database (GDSC) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Glioblastoma | scRNA-seq: human glioma tissue (18 patients, 44 tumor regions) | Single-cell RNA-seq analysis, UMAP, CellPhone DB | VEGFA, LDHA, ENO1, CA9, S100A4, P4HA1, ADM | Hypoxia-enriched myeloid clusters (MC3-MC5) were associated with immunosuppressive phenotypes and poor survival. Hypoxia influenced immune cell phenotype and spatial distribution in GBM | [80] |
| - Hypoxia-related genes: MSigDB (HALLMARK_HYPOXIA) | |||||
| Melanoma (skin cutaneous melanoma) | RNA-seq: The Cancer Genome Atlas (TCGA-SKCM) | CIBERSORT, LASSO regression | FBP1, SDC3, FOXO3 IGFBP1, S100A4, EGFR, ISG20, CP, PPARGC1A, KIF5A, DPYSL4 | Patients in the high hypoxia score group showed decreased infiltration of CD8+ T cells and activated memory CD4+ T cells, along with increased Tregs and M2 macrophages, indicating an immunosuppressive tumor microenvironment and poor prognosis | [81] |
| - Hypoxia-related genes: MSigDB database | |||||
| Colon adenocarcinoma | RNA-seq: TCGA-COAD | CIBERSORT | ALDOB, GPC1, ALDOC, SLC2A3 | High hypoxia risk scores were associated with increased M0 macrophages, decreased CD8+ T cell infiltration, and poor prognosis. Prognostic signature based on 4 genes was constructed and validated | [82] |
| Microarray: GEO (GSE39582) | |||||
| Hypoxia gene sets: MSigDB (HALLMARK_HYPOXIA) | |||||
| Thyroid cancer | RNA-seq: TCGA-THCA | CIBERSORT, Weighted Gene Co-expression Network Analysis (WGCNA), LASSO regression, machine learning (XGBoost, Random Forest) | P4HA2, TFF3, RPS6KA5, EYA1 | High P4HA2 expression was correlated with increased M2 macrophages and Tregs, forming an immunosuppressive microenvironment linked to tumor progression | [83] |
| Microarray: GEO (GSE29265, GSE33630) | |||||
| Hepatocellular carcinoma | RNA-seq: TCGA-liver hepatocellular carcinoma | CIBERSORT, LASSO regression | ANLN, CBX2, DLGAP5, FBLN2, FTCD, HMOX1, IGLV1-44, IL33, LCAT, LPCAT1, MK167, PFN2, RNF145, S100A9, SPP1 | Hypoxia subtype cluster 2 (worse overall survival, disease survival, disease-specific specific survival, progression-free survival) displayed increased TIL (tumor-infiltrating lymphocytes) including CD8 T cells and regulatory T cells. | [84] |
| These patients also exhibited higher PD-L1 expression and higher TMB | |||||
| Bladder cancer | RNA-seq: TCGA-BLCA sample | ESTIMATE, ssGSEA, MCPcounter, EPIC, TIMER | ANXA6, CYBB, SP11, C5AR1, COL6A1, COL6A2, ITGB2, TIMP2, FCER1G, TLR8 | Patients with higher hypoxic scores had shorter overall survival while infiltration density and immune score including CD8 T-effector signature were increased | [85] |
| Hypoxia-related genes: GeneCards database | |||||
| Immunotherapeutic cohorts: IMvigor210 cohort (advanced urothelial cancer with atezolizumab intervention) | |||||
| Ovarian cancer | RNA-seq: TCGA-OV sample | ssGSEA, ESTIMATE, Boruta | PGAM1, TPI1, SLC2A1, TUBB6, VEGFA, ENO1, ADM, ALDOA, CDKN3, LDHA, MIF, MRPS17, NDRG1, P4HA1 | Patients with high hypoxia scores exhibited increased immune cell infiltration and showed greater sensitivity to immunotherapy, displaying characteristics of ‘hot tumors.' Evaluating hypoxia response states may thus aid in developing more effective immunotherapy strategies | [86] |
| Microarray: GEO (GSE18520) | |||||
| International cancer genome consortium (ICGC-OV-AU), | |||||
| Transcriptome data: GTEx (normal ovarian tissue) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Hypoxia score evaluation: CMAP |
Note that the rows colored in gray indicate the studies reporting a positive prognosis between hypoxic gene expression and the outcome of patients (i.e., high hypoxic gene signature predicts a better treatment response). BLCA, bladder cancer; CESC, cervical squamous cell carcinoma and endocervical adenocarcinoma; CIBERSORT, Cell type Identification By Estimating Relative Subsets Of RNA Transcripts; CMAP, connectivity map; COAD, colon adenocarcinoma; EPIC, Estimating the Proportion of Immune and Cancer cells; ESTIMATE, Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data; GBM, glioblastoma multiforme; GDSC, Genomics of Drug Sensitivity in Cancer; GEO, Gene Expression Omnibus; GTEx, Genotype-Tissue Expression project; HNSCC, head and neck squamous cell carcinoma; ICGC-OV-AU, International Cancer Genome Consortium Ovarian Cancer–Australia project; KIRC, kidney renal clear cell carcinoma; LASSO, Least Absolute Shrinkage and Selection Operator; LUAD, lung adenocarcinoma; OV, ovarian cancer; PD-L1, programmed death-ligand 1; RNA-seq, RNA sequencing; scRNA-seq, single-cell RNA sequencing; SKCM, skin cutaneous melanoma; ssGSEA, single-sample gene set enrichment analysis; TARGET, Therapeutically Applicable Research to Generate Effective Treatments; TCGA, The Cancer Genome Atlas; THCA, thyroid carcinoma; TIDE, Tumor Immune Dysfunction and Exclusion; TIL, tumor-infiltrating lymphocytes; TIMER, Tumor IMmune Estimation Resource; TMB, tumor mutational burden; t-SNE, t-distributed Stochastic Neighbor Embedding; UMAP, Uniform Manifold Approximation and Projection.
| Technique | Imaging agent requirements | Measured entity | Measurement accuracy or sensitivity and specificity | Feasibility or availability in clinical use | Limitations and further comments | Reference |
|---|---|---|---|---|---|---|
| Fluorescent/phosphorescent imaging | Fluorescent/phosphorescent dyes | Hypoxia in living cells, pO2 | Phosphorescent lifetime microscopy: pO2 average error 5 mmHg | Feasible | Limited penetration depth; requirement of the ergulatory agency’s approval for dyes | [141] |
| Blood-oxygen level-dependent magnetic resonance imaging | None | Difference in magnetization between oxy- and deoxyhemoglobin | Sensitivity 73.8%, specificity 52% | Available in clinics | Not providing tissue pO2 | [142] |
| Dynamic contrast-enhanced MRI | Gadolinium-based contrast agent | Tissue vasculature and permeability | Indirectly associated with hypoxia | Available in clinics | Not providing tissue pO2 | [121] |
| 18F-fluoromisonidazole positron emission tomography | 18F-fluoromisonidazole | Hypoxia in living cells | Sensitivity 100%, specificity 87.5% | Available in clinics | Radiation exposure; not providing tissue pO2 | [140] |
| Near-infrared spectroscopy and imaging | None | Optical absorption of oxy- and deoxyhemoglobin, saturation of percutaneous oxygen SpO2, tissue oxygen saturation StO2 | StO2 average error 0.3% | Feasible | Not quantitative for tissue pO2 | [143] |
| A point measurement like a pulse oximeter (SpO2) is routinely used in clinics | ||||||
| Electron paramagnetic resonance (EPR) imaging | Free radicals stable in vivo | pO2 | pO2 resolution 1 mmHg | Feasible | A human-size EPR imager is not available for clinical use | [132] |
| EPR spectroscopy has been performed in a clinical trial | ||||||
| Requirement of the regulatory agency’s approval for free radical agents | ||||||
| Photoacoustic imaging (PAI) | Methylene blue, other PA agents | pO2 | pO2 average error 7% | Feasible | Requirement of the regulatory agency’s approval for PA agents | [144] |
| Cancer type | Database | Method(s) to analyze the relationship between hypoxia and immune cells | Hypoxia-relevant gene | Result | Reference |
|---|---|---|---|---|---|
| Osteosarcoma | Transcriptional expression data: TARGET, GEO | CIBERSORT, Immune cell abundance identifier (ImmuCellAI), ESTIMATE, LASSO regression | MAFF, COL5A2, FAM162A, SQOR, UQCRB, SFXN4, PFKFB2, COX6A2 | Patients with high risk scores (high hypoxic gene expression) exhibited poor prognosis, ‘cold’ tumor phenotype, predicted to have poor responses to immunotherapy | [73] |
| Transcriptome data: GTEx | |||||
| Hypoxia-related genes: Molecular Signatures Database (MSigDB) | |||||
| Breast cancer | RNA-seq: TCGA, the University of California Santa Cruz Xena | ImmuCellAI, ESTIMATE, Immunophenoscore (IPS), TIDE algorithm | DARS2, ESRP1, SLC2A1, TH, MAFF | Higher risk group with poor outcomes had lower stromal and immune score with increased M2 & M0 macrophages, resting NK cells, regulatory T cells, monocytes and neutrophils. Prognosis analysis towards anti–PD-L1 therapy did not meet the statistical differences between low and high risk score patient groups | [74] |
| Microarray dataset: GEO | |||||
| Immunotherapeutic cohorts: IMvigor210 cohort (advanced urothelial cancer with atezolizumab intervention) & GEO | |||||
| Hypoxia-related genes: MSigDB | |||||
| Gastric cancer | Single-cell RNA-seq: GEO database (10 normal tissue, 26 gastric cancer samples) | CIBERSORT, ESTIMATE, LASSO regression, TIDE | POSTN, BMP4, MXRA5, LBH | Higher hypoxia score patients had fewer antitumor immune cells (e.g., activated NK cells and CD8+ T cells) while cancer-promoting immune cells (e.g., resting NK cells and M2 macrophages) were increased. Patients with high hypoxia score had a poor prognosis to immunotherapy and lower TMB | [75] |
| Bulk RNA-seq: TCGA (32 normal tissues, 375 gastric cancer tissues) | |||||
| Pancreatic ductal adenocarcinoma | RNA-seq: TCGA | LASSO regression, XGBoost, Random Forest, TIDE | PKP2, SLC2A1, LDHA, PlGA, PLOD1, PTGS2, GCK, POMT1, TIMM50, FUT8, ENO1, PDK1, CHEK2, MPC1, HSPA5, PLAC8, KDM3A, P4HA1, PPlA, NUP98, ALDH1B1, 6TC1, SLC25A4, TIMMDC1, CENPA, NSUN2, SLC25A42, TIPARP, ERRFI1, PNPT1, AK4 | Patients with high-risk scores had more severe immunosuppressive environment (e.g., M0 macrophages and dendritic cells) and poor prognosis to immunotherapy | [72] |
| Transcriptome data: GTEx | |||||
| Clear cell renal carcinoma | RNA-seq: TCGA-KIRC sample | LASSO regression, t-SNE, ImmuCellAI | PLAUR, UCN, SPABPC1L, LC16A12, NFE2L3, KCNAB1 | High hypoxia and low immune status are associated with poor overall survival. A prognostic model based on six hypoxia–immune-related genes was constructed and validated, showing good predictive performance | [76] |
| Lung adenocarcinoma | RNA-seq: TCGA-LUAD sample | LASSO regression | HK1, SLC2A1, STC1, XPNPEP1, PDK3, PFKL | Hypoxia-related genes that their expression influenced immune cell infiltration can serve as poor prognostic markers and potential targets for immunotherapy in LUAD | [77] |
| Microarray: GEO (GSE72094) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Head and neck squamous cell carcinoma (HNSCC) | RNA-seq: TCGA-HNSCC sample | LASSO regression, CIBERSORT, ESTIMATE, TIDE, Xcell | SRPX, PGK1, STG1, HS3ST1, CDKN1B, HK1 | The group with high expression of hypoxia-related genes showed lower immune cell infiltration and poor prognosis. This prognostic model also has potential for predicting responses to immune checkpoint inhibitor therapy | [78] |
| Microarray: GEO (GSE65858, GSE41613, GSE85446) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Cervical cancer | RNA-seq: TCGA-CESC sample | Cox regression, LASSO regression, ESTIMATE, CIBERSORT, MCPcounter | EFNA1, IER3, ISG20, KLF7, LDHC, P4HA2, PGM1, RBPJ, STC1 | Hypoxia-related genes are associated with increased immunosuppressive cells and decreased antitumor immune cells in tumor. ccHPS model might give us insights into antitumor immunotherapy and further improve the strategies for treating cervical cancer | [79] |
| Microarray: GEO (GSE44001) | |||||
| Gene annotation: GENCODE (human) | |||||
| Chemotherapeutic sensitivity for tumor samples: genomics of drug sensitivity in cancer database (GDSC) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Glioblastoma | scRNA-seq: human glioma tissue (18 patients, 44 tumor regions) | Single-cell RNA-seq analysis, UMAP, CellPhone DB | VEGFA, LDHA, ENO1, CA9, S100A4, P4HA1, ADM | Hypoxia-enriched myeloid clusters (MC3-MC5) were associated with immunosuppressive phenotypes and poor survival. Hypoxia influenced immune cell phenotype and spatial distribution in GBM | [80] |
| - Hypoxia-related genes: MSigDB (HALLMARK_HYPOXIA) | |||||
| Melanoma (skin cutaneous melanoma) | RNA-seq: The Cancer Genome Atlas (TCGA-SKCM) | CIBERSORT, LASSO regression | FBP1, SDC3, FOXO3 IGFBP1, S100A4, EGFR, ISG20, CP, PPARGC1A, KIF5A, DPYSL4 | Patients in the high hypoxia score group showed decreased infiltration of CD8+ T cells and activated memory CD4+ T cells, along with increased Tregs and M2 macrophages, indicating an immunosuppressive tumor microenvironment and poor prognosis | [81] |
| - Hypoxia-related genes: MSigDB database | |||||
| Colon adenocarcinoma | RNA-seq: TCGA-COAD | CIBERSORT | ALDOB, GPC1, ALDOC, SLC2A3 | High hypoxia risk scores were associated with increased M0 macrophages, decreased CD8+ T cell infiltration, and poor prognosis. Prognostic signature based on 4 genes was constructed and validated | [82] |
| Microarray: GEO (GSE39582) | |||||
| Hypoxia gene sets: MSigDB (HALLMARK_HYPOXIA) | |||||
| Thyroid cancer | RNA-seq: TCGA-THCA | CIBERSORT, Weighted Gene Co-expression Network Analysis (WGCNA), LASSO regression, machine learning (XGBoost, Random Forest) | P4HA2, TFF3, RPS6KA5, EYA1 | High P4HA2 expression was correlated with increased M2 macrophages and Tregs, forming an immunosuppressive microenvironment linked to tumor progression | [83] |
| Microarray: GEO (GSE29265, GSE33630) | |||||
| Hepatocellular carcinoma | RNA-seq: TCGA-liver hepatocellular carcinoma | CIBERSORT, LASSO regression | ANLN, CBX2, DLGAP5, FBLN2, FTCD, HMOX1, IGLV1-44, IL33, LCAT, LPCAT1, MK167, PFN2, RNF145, S100A9, SPP1 | Hypoxia subtype cluster 2 (worse overall survival, disease survival, disease-specific specific survival, progression-free survival) displayed increased TIL (tumor-infiltrating lymphocytes) including CD8 T cells and regulatory T cells. | [84] |
| These patients also exhibited higher PD-L1 expression and higher TMB | |||||
| Bladder cancer | RNA-seq: TCGA-BLCA sample | ESTIMATE, ssGSEA, MCPcounter, EPIC, TIMER | ANXA6, CYBB, SP11, C5AR1, COL6A1, COL6A2, ITGB2, TIMP2, FCER1G, TLR8 | Patients with higher hypoxic scores had shorter overall survival while infiltration density and immune score including CD8 T-effector signature were increased | [85] |
| Hypoxia-related genes: GeneCards database | |||||
| Immunotherapeutic cohorts: IMvigor210 cohort (advanced urothelial cancer with atezolizumab intervention) | |||||
| Ovarian cancer | RNA-seq: TCGA-OV sample | ssGSEA, ESTIMATE, Boruta | PGAM1, TPI1, SLC2A1, TUBB6, VEGFA, ENO1, ADM, ALDOA, CDKN3, LDHA, MIF, MRPS17, NDRG1, P4HA1 | Patients with high hypoxia scores exhibited increased immune cell infiltration and showed greater sensitivity to immunotherapy, displaying characteristics of ‘hot tumors.' Evaluating hypoxia response states may thus aid in developing more effective immunotherapy strategies | [86] |
| Microarray: GEO (GSE18520) | |||||
| International cancer genome consortium (ICGC-OV-AU), | |||||
| Transcriptome data: GTEx (normal ovarian tissue) | |||||
| Hypoxia-related genes: MsigDB database (HALLMARK_HYPOXIA) | |||||
| Hypoxia score evaluation: CMAP |
| Technique | Imaging agent requirements | Measured entity | Measurement accuracy or sensitivity and specificity | Feasibility or availability in clinical use | Limitations and further comments | Reference |
|---|---|---|---|---|---|---|
| Fluorescent/phosphorescent imaging | Fluorescent/phosphorescent dyes | Hypoxia in living cells, pO2 | Phosphorescent lifetime microscopy: pO2 average error 5 mmHg | Feasible | Limited penetration depth; requirement of the ergulatory agency’s approval for dyes | [141] |
| Blood-oxygen level-dependent magnetic resonance imaging | None | Difference in magnetization between oxy- and deoxyhemoglobin | Sensitivity 73.8%, specificity 52% | Available in clinics | Not providing tissue pO2 | [142] |
| Dynamic contrast-enhanced MRI | Gadolinium-based contrast agent | Tissue vasculature and permeability | Indirectly associated with hypoxia | Available in clinics | Not providing tissue pO2 | [121] |
| 18F-fluoromisonidazole positron emission tomography | 18F-fluoromisonidazole | Hypoxia in living cells | Sensitivity 100%, specificity 87.5% | Available in clinics | Radiation exposure; not providing tissue pO2 | [140] |
| Near-infrared spectroscopy and imaging | None | Optical absorption of oxy- and deoxyhemoglobin, saturation of percutaneous oxygen SpO2, tissue oxygen saturation StO2 | StO2 average error 0.3% | Feasible | Not quantitative for tissue pO2 | [143] |
| A point measurement like a pulse oximeter (SpO2) is routinely used in clinics | ||||||
| Electron paramagnetic resonance (EPR) imaging | Free radicals stable in vivo | pO2 | pO2 resolution 1 mmHg | Feasible | A human-size EPR imager is not available for clinical use | [132] |
| EPR spectroscopy has been performed in a clinical trial | ||||||
| Requirement of the regulatory agency’s approval for free radical agents | ||||||
| Photoacoustic imaging (PAI) | Methylene blue, other PA agents | pO2 | pO2 average error 7% | Feasible | Requirement of the regulatory agency’s approval for PA agents | [144] |
Note that the rows colored in gray indicate the studies reporting a positive prognosis between hypoxic gene expression and the outcome of patients (i.e., high hypoxic gene signature predicts a better treatment response). BLCA, bladder cancer; CESC, cervical squamous cell carcinoma and endocervical adenocarcinoma; CIBERSORT, Cell type Identification By Estimating Relative Subsets Of RNA Transcripts; CMAP, connectivity map; COAD, colon adenocarcinoma; EPIC, Estimating the Proportion of Immune and Cancer cells; ESTIMATE, Estimation of STromal and Immune cells in MAlignant Tumor tissues using Expression data; GBM, glioblastoma multiforme; GDSC, Genomics of Drug Sensitivity in Cancer; GEO, Gene Expression Omnibus; GTEx, Genotype-Tissue Expression project; HNSCC, head and neck squamous cell carcinoma; ICGC-OV-AU, International Cancer Genome Consortium Ovarian Cancer–Australia project; KIRC, kidney renal clear cell carcinoma; LASSO, Least Absolute Shrinkage and Selection Operator; LUAD, lung adenocarcinoma; OV, ovarian cancer; PD-L1, programmed death-ligand 1; RNA-seq, RNA sequencing; scRNA-seq, single-cell RNA sequencing; SKCM, skin cutaneous melanoma; ssGSEA, single-sample gene set enrichment analysis; TARGET, Therapeutically Applicable Research to Generate Effective Treatments; TCGA, The Cancer Genome Atlas; THCA, thyroid carcinoma; TIDE, Tumor Immune Dysfunction and Exclusion; TIL, tumor-infiltrating lymphocytes; TIMER, Tumor IMmune Estimation Resource; TMB, tumor mutational burden; t-SNE, t-distributed Stochastic Neighbor Embedding; UMAP, Uniform Manifold Approximation and Projection.
MRI, magnetic resonance imaging; PA, photoacoustic.
