Purpose This study aimed to evaluate the molecular features of clear cell adenocarcinoma (CCA) of the urinary tract and investigate its pathogenic pathways and possible actionable targets.
Materials and Methods We retrospectively collected the data of patients with CCA between January 1999 and December 2016; the data were independently reviewed by two pathologists. We selected five cases of urinary CCA, based on the clinicopathological features. We analyzed these five cases by whole exome sequencing (WES) and subsequent bioinformatics analyses to determine the mutational spectrum and possible pathogenic pathways.
Results All patients were female with a median age of 62 years. All tumors were located in the urethra and showed aggressive behavior with disease progression. WES revealed several genetic alterations, including driver gene mutations (AMER1, ARID1A, CHD4, KMT2D, KRAS, PBRM1, and PIK3R1) and mutations in other important genes with tumor-suppressive and oncogenic roles (CSMD3, KEAP1, SMARCA4, and CACNA1D). We suggest putative pathogenic pathways (chromatin remodeling pathway, mitogen-activated protein kinase signaling pathway, phosphoinositide 3-kinase/AKT/mammalian target of rapamycin pathway, and Wnt/β-catenin pathway) as candidates for targeted therapies.
Conclusion Our findings shed light on the molecular background of this extremely rare tumor with poor prognosis and can help improve treatment options.
Citations
Citations to this article as recorded by
Molecular characterization of clear cell adenocarcinoma of the urinary bladder Shilpy Jha, Anandi Lobo, Ankur R Sangoi, Shivani R Kandukuri, Sourav K Mishra, Samriti Arora, Aditi Aggarwal, Shivani Sharma, Ekta Jain, Mahmut Akgul, Andres M Acosta, Niharika Pattnaik, Seema Kaushal, Manas Baisakh, Sudhasmita Routa, Nada Shaker, Jasrema Histopathology.2026; 88(6): 1167. CrossRef
Clear Cell Adenocarcinoma of the Urinary Tract Arising in a Young Man With the Congenital Malformation Disorder Opitz Syndrome: A Case Report Jessica F. Williams, Juan F. Santoscoy Gutierrez, José I. Nolazco, Graeme S. Steele, Kristine S. Burk, Michelle S. Hirsch, Natalie M. Rizzo International Journal of Surgical Pathology.2026; 34(4): 1074. CrossRef
Histologic mimics of urothelial carcinoma Douglas Jian-Xian Wu, Emily Chan Seminars in Diagnostic Pathology.2026; 43(2): 150993. CrossRef
Clinical and Molecular Characterization of Clear Cell Adenocarcinoma of the Urinary Tract Manju Aron, Darshan S. Chandrashekar, Eman Adulfatah, Lakshmi P. Kunju, Bassel Zein-Sabatto, João Lobo, Sofia Canete-Portillo, Roni M. Cox, Christopher G. Przybycin, Khaleel Al-Obaidy, Muhammad T. Idrees, Sara M. Falzarano, Angela J. Wu, Shuko Harada, Geo American Journal of Surgical Pathology.2026; 50(6): 589. CrossRef
Primary urethral clear cell carcinoma: a rare case report Jiaxiang Yi, Weigang Ren, Weijie Song, Yixing Duan Frontiers in Oncology.2026;[Epub] CrossRef
Urethral clear cell adenocarcinoma in an adult female: A rare case report Yacob Sheiferawe Seman, Michael Teklehaimanot Abera, Fadil Nuredin Abrar, Tesfaye Kebede Legesse, Mesfin Asefa Tola, Tsiyon Nigusie Alemu Urology Case Reports.2025; 58: 102882. CrossRef
Two rare cases of primary clear cell adenocarcinoma of the urethra: clinical experience, case report and literature review Bohao Jiang, Jiyuan Hu, Benqiao Wang, Xujia Liu, Ling Tong, Yitong Xu, Hao Zhang Frontiers in Oncology.2025;[Epub] CrossRef
Comprehensive Molecular, Pathological, and Clinical Characterization of Clear Cell Adenocarcinoma of the Urinary Tract Rayan Rammal, Florestan J. Koll, Ziyu Chen, Jacob E. Tallman, Syed Muneeb Alam, Jordan E. Eichholz, Walid Chatila, Tejiri Agbamu, Andrew T. Lenis, Merve Basar, Cansu Yol, Jie-Fu Chen, Judy Sarungbam, Ying-Bei Chen, Anuradha Gopalan, Samson W. Fine, Satish Modern Pathology.2025; 38(10): 100821. CrossRef
Association between CACNA1D polymorphisms and hypospadias in a southern Chinese population Ye He, Binyao Li, Xinying Zhao, Lingling Pan, Yanqing Liu, Chaoting Lan, Fuming Deng, Wen Fu, Yan Zhang, Xiaoyu Zuo Journal of Pediatric Urology.2024; 20(3): 438.e1. CrossRef
The L‐type calcium channel CaV1.3: A potential target for cancer therapy Xuerun Liu, Boqiang Shen, Jingyi Zhou, Juan Hao, Jianliu Wang Journal of Cellular and Molecular Medicine.2024;[Epub] CrossRef